Publications
Yoni Schirris
2023
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Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric studyCell Reports MedicineJ. M. Niehues, P. Quirke, N. P. West, H. I. Grabsch, M. Van Treeck, Y. Schirris, G. P. Veldhuizen, G. G. Hutchins, S. D. Richman, S. Foersch, T. J. Brinker, J. Fukuoka, A. Bychkov, W. Uegami, D. Truhn, H. Brenner, A. Brobeil, M. Hoffmeister, J. N. Kather, 2023, 4;(4):100980
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1240P Multi-centric validation of an AI-based sTIL% scoring model for breast cancer H&E whole-slide imagesAnnals of OncologyY. Schirris, R. Voorthuis, M. Opdam, E. Gavves, R. De Menezes, S. Linn, H. Horlings, 2023, 34
2022
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DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in colorectal and breast cancerMedical Image AnalysisY. Schirris, E. Gavves, I. Nederlof, H. M. Horlings, J. Teuwen, 2022, 79
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WeakSTIL: weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you needMedical Imaging 2022: Digital and Computational PathologyY. Schirris, M. Engelaer, A. Panteli, H. M. Horlings, E. Gavves, J. Teuwen, 2022
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HRD-related morphology discovery in breast cancer by controlling for confounding factorsCell Reports MedicineY. Schirris, H. M. Horlings, 2022, 3;(12):100873